Version 3.0.3 downloads
Please inform us of any bugs, issues or feature requests via our online forum:
https://www.ccpn.ac.uk/forums/
MacOSX Download
There is now a version available for Catalina/Big Sur. Please use this download rather than the launcher app. We are also no longer able to guarantee support for MacOS 10.12 and earlier.
Launcher App:
https://www.ccpn.ac.uk/download/3.0.3/CcpNmrLauncher.dmg
Please make sure you follow the instructions in the installer window. The first time you launch the App you will probably have to open it with right-click / Open in order to verify that you want to open an App from an unregistered Developer (in future we hope to gain official Apple Developer status, but as yet we don't have this).
If you encounter any errors that the App 'can't be opened' or 'is damaged', please go to System Preferences / Security & Privacy / General and select Allow apps downloaded from Anywhere. If Anywhere is not an option, open a terminal window and enter sudo spctl --master-disable and then try opening the app again via right-click / Open.
Once you have opened the Launcher once this way, you should be okay and can set you security settings back to Allow apps downloaded from App Store or App Store and identified developers.
Download for command line installation:
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3MacOS.tgz
When you have downloaded the .tgz, just uncompress it where you want it on your disk (no blank spaces in the directory path!),
e.g. tar xzf ccpnmr3.0.3MacOS.tgz ~/home/user/projects
To start the program, open up an ordinary Mac terminal window and simply run bin/assign in the ccpnmr3 top directory. You can add the bin/ directory to your PATH, in which case you will then be able to run it just by typing assign. (Creating a symbolic link to assign will not work.). Alternatively, create an alias in your .bash or .cshrc.
See our video tutorial on command line installation of Analysis here.
MacOS Catalina
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3MacOSCatalina.tgz
After extracting the file you will need to run the following command in the directory where you have placed the ccpnmr3.0.3 directory:
sudo xattr -rd com.apple.quarantine ccpnmr3.0.3
Example data files and tutorial projects can be downloaded below.
Linux Download
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3CentOS7.tgz
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3OpenSUSE15.0.tgz
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3Ubuntu16.04.tgz
e.g.: tar xzf ccpnmr3.0.2CentOS7.tgz ~/home/users/projects
This might also work for some other flavours of Linux (please let us know if they do!). If they do not work for a particular Linux variant, please contact us to see if we can work with you to get a distribution ready.
See our video tutorial on command line installation of Analysis here.
To run the program, open a terminal window and run bin/assign in the ccpnmr3 top directory. You can add the bin/ directory to your PATH, in which case you will then be able to run it just by typing assign. (Creating a symbolic link to assign will not work.). Alternatively, create an alias in your .bash or .cshrc.
Example data files and tutorial projects can be downloaded below.
In the unusual event that you get the following error message (or very similar) on CentOS7:
error while loading shared libraries: libXss.so.1
then please run the following command from a terminal window:
yum install libXScrnSaver
to install the missing dependencies.
Windows10 Download - beta version
https://www.ccpn.ac.uk/download/3.0.3/ccpnmr3.0.3Windows.zip
Unzip the file (this may be quite a slow process) and then double-click on the update.bat, once updates are complete, run assign.bat file to start the program.
This is a beta version and you may still encounter various bugs. Please let us know on the forum or by e-mail (ccpnmr3@gmail.com) if you encounter any problems, so we can help to fix them.
We recommend running the program on a 64-bit computer with minimum i5 processor. The program may be slow to start up, but should then run okay. You can improve the performance by installing the program on a solid state drive (SSD).
Example data files and tutorial projects can be downloaded below.
Data and Examples
http://www.ccpn.ac.uk/download/3.0.2/data3.0.2.tgz
http://www.ccpn.ac.uk/download/3.0.2/data3.0.2.zip
Changes from V3.0.2
-- General --
* Fixed several issues including:
Loading saved projects with compromised graphical items
Reading NMRStar files containing multiple chains
Validating SSL certificates
Significant speed optimisation on opening and displaying spectra
Various minor bug fixes on GUI items and core objects
* Added new features including:
New fonts for SpectrumDisplays and widgets
New context menu items and toolbar shortcuts for 1D spectrum Display
New context menu items on sidebar. Including actions for cloning SpectrumGroups and ChemicalShiftLists
New peak annotation options. Editable from Peaklist tables
New and updated html video tutorial files
-- Assign --
Backbone assignment GUI module: Corrected i-1/i+1 matching
Sequence Graph GUI module: Calculation and drawing speed optimisations
ChemicalShift Mapping GUI module: Now works with spectrumGroups and series ordering. Added a "priority-list" for NmrAtoms selections
Various minor bug fixes on GUI widgets and core algorithms
-- Screen --
New interactive scatter plot for the visualisation of multiple screening scorings
New flag system for labelling hits
New semi-automatic hit analysis tools
New shortcuts for displaying spectra from sidebar; including spectra linked to samples and SpectrumGroups
Various minor bug fixes on pipelines widgets and core pipe algorithms
-- NEF Reader --
New graphical tools for a facilitate NEF importing
Loading PeakList from NEF file without ChemicalShiftList
Loading PeakRestrainLinks
Notes for Analysis v2 Users
If you open up an Analysis v2 project in v3 then it will automatically get converted to v3 format. The main difference between the formats for v2 and v3 is that in v3 the top-level directory has a ".ccpn" suffix attached, and the xml files are one level further down, in the sub-directory ccpnv3 of the project directory (inside that sub-directory you will find memops/, ccp/ and ccpnmr/, as usual).
