ccpn.AnalysisStructure.lib package

Subpackages

• ccpn.AnalysisStructure.lib.runManagers package
  • Submodules
  • ccpn.AnalysisStructure.lib.runManagers.CyanaRunManager module
  • ccpn.AnalysisStructure.lib.runManagers.RunManagerABC module
  • ccpn.AnalysisStructure.lib.runManagers.XplorNihRunManager module
  • ccpn.AnalysisStructure.lib.runManagers.analyseXplorViolations module

Submodules

ccpn.AnalysisStructure.lib.DistanceRestraint module

ccpn.AnalysisStructure.lib.DistanceRestraint.getMinMaxNoeDistances(noeDistance, absMin=1.72, absMax=8.0, negError=0.2, posError=0.2)

Parameters

• noeDistance – float. calculated as in getNoeDistance

• absMin –

• absMax –

• negError –

• posError –

Returns

ccpn.AnalysisStructure.lib.DistanceRestraint.getNoeDistance(intensity, refDist=3.2, absMin=1.72, absMax=8.0, power=6)

Parameters

• intensity –

• refDist –

• absMin –

• absMax –

• power –

Returns

ccpn.AnalysisStructure.lib.importWwPdbFile module

Import of wwPDB xml validation file Adapted from Eliza’s code

ccpn.AnalysisStructure.lib.importWwPdbFile.getRamachandranTable(xroot)

ccpn.AnalysisStructure.lib.importWwPdbFile.getSimpleRamachandranTable(xroot)

ccpn.AnalysisStructure.lib.importWwPdbFile.getSimpleViolationTable(xroot)

ccpn.AnalysisStructure.lib.importWwPdbFile.getViolationTable(xroot)

ccpn.AnalysisStructure.lib.importWwPdbFile.importWwPdbFile(path, project, includeViolations=True, violationsTableName='wwPDBviolations', includeRamachandran=True, ramachandranTableName='wwPDBramachandran') → list

Import wwPDB validation results from path into project :return a list V3 object created in the project