ccpn.AnalysisMetabolomics package

Module Documentation here

Subpackages

Submodules

ccpn.AnalysisMetabolomics.AnalysisMetabolomics module

class ccpn.AnalysisMetabolomics.AnalysisMetabolomics.Metabolomics(args=<ccpn.framework.Application.Arguments object>)[source]

Bases: ccpn.AnalysisAssign.AnalysisAssign.Assign

Root class for Metabolomics application

applicationName = 'AnalysisMetabolomics'
applicationVersion = '3.1.0.beta1'
showDecompositionModule()[source]

Opens the PCA module. if you need to get the PCA module or the Decomposition base class: get the specific instance from the current ccpnModules. This allows to have multiple PCA modules at the same time

showMetabolomicsPipeline(position='bottom', relativeTo=None)[source]

Display the Metabolomics Pipeline module

ccpn.AnalysisMetabolomics.Decomposition module

ccpn.AnalysisMetabolomics.IntegralAssignment module

Module Documentation here

class ccpn.AnalysisMetabolomics.IntegralAssignment.Integral(integralId, range, slope, bias, area)[source]

Bases: object

class ccpn.AnalysisMetabolomics.IntegralAssignment.IntegralAssignment(parent=None)[source]

Bases: PyQt5.QtWidgets.QWidget

assignAndMove()[source]
assignIntegral()[source]
deassignAndMove()[source]
deassignIntegral()[source]
fillSubstanceTable(value)[source]
class ccpn.AnalysisMetabolomics.IntegralAssignment.IntegralTable(parent=None, project=None, **kwds)[source]

Bases: PyQt5.QtWidgets.QWidget

integralCallback()[source]
class ccpn.AnalysisMetabolomics.IntegralAssignment.Substance(name, atom, cs)[source]

Bases: object

class ccpn.AnalysisMetabolomics.IntegralAssignment.SubstanceTable(parent=None, **kwds)[source]

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

setSubstancename(substance, value)[source]
substanceCallback()[source]

ccpn.AnalysisMetabolomics.Integration module

Module Documentation here

class ccpn.AnalysisMetabolomics.Integration.IntegrationTable(parent=None, project=None, **kwds)[source]

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

setupAreaView()[source]
setupSpectralView()[source]
class ccpn.AnalysisMetabolomics.Integration.IntegrationWidget(parent=None, mainWindow=None, **kwds)[source]

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

getParams()[source]
setPositions(positions)[source]
tableCallback()[source]
togglePicking()[source]
turnOffPositionPicking()[source]
turnOnPositionPicking()[source]