ccpn.AnalysisMetabolomics package

Module Documentation here

Subpackages

• ccpn.AnalysisMetabolomics.lib package
  • Submodules
  • ccpn.AnalysisMetabolomics.lib.BMRBquery module
  • ccpn.AnalysisMetabolomics.lib.centering module
  • ccpn.AnalysisMetabolomics.lib.commands module
  • ccpn.AnalysisMetabolomics.lib.decomposition module
  • ccpn.AnalysisMetabolomics.lib.normalisation module
  • ccpn.AnalysisMetabolomics.lib.persistence module
  • ccpn.AnalysisMetabolomics.lib.pipeline module
  • ccpn.AnalysisMetabolomics.lib.scaling module
  • ccpn.AnalysisMetabolomics.lib.transformations module
• ccpn.AnalysisMetabolomics.ui package
  • Subpackages
    • ccpn.AnalysisMetabolomics.ui.gui package
      • Subpackages

Submodules

ccpn.AnalysisMetabolomics.AnalysisMetabolomics module

class ccpn.AnalysisMetabolomics.AnalysisMetabolomics.Metabolomics(args=<ccpn.framework.Application.Arguments object>)

Bases: ccpn.AnalysisAssign.AnalysisAssign.Assign

Root class for Metabolomics application

applicationName = 'AnalysisMetabolomics'

applicationVersion = '3.1.0.beta1'

showDecompositionModule()

Opens the PCA module. if you need to get the PCA module or the Decomposition base class: get the specific instance from the current ccpnModules. This allows to have multiple PCA modules at the same time

showMetabolomicsPipeline(position='bottom', relativeTo=None)

Display the Metabolomics Pipeline module

ccpn.AnalysisMetabolomics.Decomposition module

ccpn.AnalysisMetabolomics.IntegralAssignment module

Module Documentation here

class ccpn.AnalysisMetabolomics.IntegralAssignment.Integral(integralId, range, slope, bias, area)

Bases: object

class ccpn.AnalysisMetabolomics.IntegralAssignment.IntegralAssignment(parent=None)

Bases: PyQt5.QtWidgets.QWidget

assignAndMove()

assignIntegral()

deassignAndMove()

deassignIntegral()

fillSubstanceTable(value)

class ccpn.AnalysisMetabolomics.IntegralAssignment.IntegralTable(parent=None, project=None, **kwds)

Bases: PyQt5.QtWidgets.QWidget

integralCallback()

class ccpn.AnalysisMetabolomics.IntegralAssignment.Substance(name, atom, cs)

Bases: object

class ccpn.AnalysisMetabolomics.IntegralAssignment.SubstanceTable(parent=None, **kwds)

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

setSubstancename(substance, value)

substanceCallback()

ccpn.AnalysisMetabolomics.Integration module

Module Documentation here

class ccpn.AnalysisMetabolomics.Integration.IntegrationTable(parent=None, project=None, **kwds)

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

setupAreaView()

setupSpectralView()

class ccpn.AnalysisMetabolomics.Integration.IntegrationWidget(parent=None, mainWindow=None, **kwds)

Bases: PyQt5.QtWidgets.QWidget, ccpn.ui.gui.widgets.Base.Base

getParams()

setPositions(positions)

tableCallback()

togglePicking()

turnOffPositionPicking()

turnOnPositionPicking()