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Analysis course, April 2008
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CcpNmr Software Course: Münster September 2010
| What | Meeting |
|---|---|
| When |
2010-09-19 13:00
to 2010-09-20 17:00 |
| Where | Westfälische Wilhelms-Universität Münster |
| Contact Name | Dr. Karin-Meise-Gresch |
| Attendees | Tim & Wayne |
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Satellite course to FGMR10, Joint Benelux/German MR Conference, teaching use of the CcpNmr software suite.
There will be a satellite course to the joint Benelux/German FGMR10 magnetic resonance conference in Münster, teaching the use of the CcpNmr software suite, including CcpNmr Analysis; for spectrum visualisation, resonance assignment and data analysis. The CcpNmr software suite is an actively supported, graphical system that provides CCPN applications, which are free for academics and non-profit users, and an interface to a number of other tightly linked external programs.
A screen-shot from the CcpNmr Analysis software
The course introduces the basics of CcpNmr Analysis, covering macromolecular resonance assignment, structure calculation and NMR parameter extraction. Also, some components of the Extend-NMR software pipeline, like ARIA and CING (for structure calculation and validation) will be incorporated into the material. Topics include:
- Configuring CcpNmr Analysis
- The setup and navigation of multi-dimensional processed NMR spectra
- Peak picking and connecting peaks in related spectra
- Semi-automated and automated assignment of protein sequence
- Extraction of data for efficient relaxation rate analysis
- Generation of NOE-derived distance restraints
- Structure calculation using a web service running ARIA
- Restraint violation analysis
- Structure validation using the iCING web service
The course runs will be held over two days, on Sunday 19th September from 13.00 to 18.00 and on Monday 20th September from 09.00 to 17.00. Participation is free, but registration via the FGMR10 conference system is required. Participants do not need prior experience with CCPN software, but it is assumed that all participants will be familiar with macromolecular NMR. The course will be held in rooms W409/W410 of the Institute of Inorganic and Physical Chemistry, Corrensstrasse 28 (University of Münster).
Ph.D. in protein NMR spectroscopy
CCPN General Meeting