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Publications

by Tim Stevens last modified 2010-07-13 22:59

The publications of Tim Stevens

19. Sharpe HJ, Stevens TJ, Munro S.
A comprehensive comparison of transmembrane domains reveals organelle specific properties.
Cell. 2010 Jul 9;142(1):158-69.

18. Fogh RH, Boucher W, Ionides JM, Vranken WF, Stevens TJ, Laue ED
MEMOPS: data modelling and automatic code generation.
J Integr Bioinform. 2010 Mar 25;7(3): 2010-123

17. Cheung M, Maguire ML,  Stevens TJ, Broadhurst RW.
DANGLE: a Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure.
J Mag. Reson. 2010 Feb;202(2):223-33.

16. Mokrab Y, Stevens TJ, Mitzuguchi K.
Lipophobicity and the residue environments of the transmembrane alpha-helical bundle.
Proteins. 2009 Jan;74(1):32-49.

15. Stevens TJ, Paoli M.
RCC1-like repeat proteins: A pangenomic, structurally diverse new superfamily of beta-propeller proteins.
Proteins. 2008 Feb 1;70(2):378-87.

14. Fogh RH, Vranken WF, Boucher W, Stevens TJ, Laue ED.
A nomenclature and data model to describe NMR experiments.
J Biomol NMR. 2006 Nov;36(3):147-55

13. Sanderson A, Stott K, Stevens TJ, Thomas JO.
Engineering the Structural Stability and Functional Properties of the GI Domain into the Intrinsically Unfolded GII Domain of the Yeast Linker Histone Hho1p.
J Mol Biol. 2005 Jun 10;349(3):608-20.

12. Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL,Ionides J, Laue ED.
The CCPN data model for NMR spectroscopy: development of a software pipeline.
Proteins. 2005 Jun 1;59(4):687-96.

11. Fogh RH, Boucher W, Vranken WF, Pajon A, Stevens TJ, Bhat TN, Westbrook J, Ionides JM, Laue ED.
A framework for scientific data modeling and automated software development.
Bioinformatics. 2004 Dec 21;1678-84.

10. Stevens TJ, Mizuguchi K, Arkin IT.
Distinct protein interfaces in transmembrane domains suggest an in vivo folding model.
Protein Sci. 2004 Nov;13(11):3028-37.

9. Ali T, Coles P, Stevens TJ, Stott K, Thomas JO.
Two homologous domains of similar structure but different stability in the yeast linker histone, Hho1p.
J Mol Biol. 2004 Apr 16;338(1):139-48.

8. Borner GH, Lilley KS, Stevens TJ, Dupree P.
Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.
Plant Physiol. 2003 Jun;132(2):568-77. Epub 2003 May 01.

7. Torres J, Stevens TJ, Samso M.
Membrane proteins: the 'Wild West' of structural biology.
Trends Biochem Sci. 2003 Mar;28(3):137-44. Review.

6. Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P.
Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis.
Plant Physiol. 2002 Jun;129(2):486-99.

5. Stevens TJ, Arkin IT.
Substitution rates in alpha-helical transmembrane proteins.
Protein Sci. 2001 Dec;10(12):2507-17.

4. Stevens TJ, Arkin IT.
Turning an opinion inside-out: Rees and Eisenberg's commentary (Proteins 2000;38:121-122) on "Are membrane proteins 'inside-out' proteins?" (Proteins 1 999;36:135-143).
Proteins. 2000 Aug 15;40(3):463-4.

3. Stevens TJ, Arkin IT.
Do more complex organisms have a greater proportion of membrane proteins in their genomes?
Proteins. 2000 Jun 1;39(4):417-20.

2. Stevens TJ, Arkin IT.
The effect of nucleotide bias upon the composition and prediction of transmembrane helices.
Protein Sci. 2000 Mar;9(3):505-11.

1. Stevens TJ, Arkin IT.
Are membrane proteins "inside-out" proteins?
Proteins. 1999 Jul 1;36(1):135-43.


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