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The publications of Tim Stevens
22. The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR.
Chignola F, Mari S, Stevens TJ, Fogh RH, Mannella V, Boucher W, Musco G.
Bioinformatics. 2011 Jan 6.
21. A structural dissection of amino acid substitutions in helical transmembrane proteins.
Mokrab Y, Stevens TJ, Mizuguchi K.
Proteins. 2010 Nov 1;78(14):2895-907.
20. Straightforward and complete deposition of NMR data to the PDBe.
Penkett CJ, van Ginkel G, Velankar S, Swaminathan J, Ulrich EL, Mading S, Stevens TJ, Fogh RH, Gutmanas A, Kleywegt GJ, Henrick K, Vranken WF.
J Biomol NMR. 2010 Oct;48(2):85-92.
19. A comprehensive comparison of transmembrane domains reveals organelle-specific properties.
Sharpe HJ, Stevens TJ, Munro S.
Cell. 2010 Jul 9;142(1):158-69.
18. MEMOPS: data modelling and automatic code generation.
Fogh RH, Boucher W, Ionides JM, Vranken WF, Stevens TJ, Laue ED.
J Integr Bioinform. 2010 Mar 25;7(3).
17. DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure.
Cheung MS, Maguire ML, Stevens TJ, Broadhurst RW.
J Magn Reson. 2010 Feb;202(2):223-33.
16. Lipophobicity and the residue environments of the transmembrane alpha-helical bundle.
Mokrab Y, Stevens TJ, Mizuguchi K.
Proteins. 2009 Jan;74(1):32-49
15. RCC1-like repeat proteins: a pangenomic, structurally diverse new superfamily of beta-propeller domains.
Stevens TJ, Paoli M.
Proteins. 2008 Feb 1;70(2):378-87.
14. A nomenclature and data model to describe NMR experiments.
Fogh RH, Vranken WF, Boucher W, Stevens TJ, Laue ED.
J Biomol NMR. 2006 Nov;36(3):147-55.
13. Engineering the structural stability and functional properties of the GI domain into the intrinsically unfolded GII domain of the yeast linker histone Hho1p.
Sanderson A, Stott K, Stevens TJ, Thomas JO.
J Mol Biol. 2005 Jun 10;349(3):608-20.
12. The CCPN data model for NMR spectroscopy: development of a software pipeline.
Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED.
Proteins. 2005 Jun 1;59(4):687-96.
11. A framework for scientific data modeling and automated software development.
Fogh RH, Boucher W, Vranken WF, Pajon A, Stevens TJ, Bhat TN, Westbrook J, Ionides JM, Laue ED.
Bioinformatics. 2005 Apr 15;21(8):1678-84.
10. Distinct protein interfaces in transmembrane domains suggest an in vivo folding model.
Stevens TJ, Mizuguchi K, Arkin IT.
Protein Sci. 2004 Nov;13(11):3028-37.
9. Two homologous domains of similar structure but different stability in the yeast linker histone, Hho1p.
Ali T, Coles P, Stevens TJ, Stott K, Thomas JO.
J Mol Biol. 2004 Apr 16;338(1):139-48.
8. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.
Borner GH, Lilley KS, Stevens TJ, Dupree P.
Plant Physiol. 2003 Jun;132(2):568-77.
7. Membrane proteins: the 'Wild West' of structural biology.
Torres J, Stevens TJ, Samsó M.
Trends Biochem Sci. 2003 Mar;28(3):137-44.
6. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis.
Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P.
Plant Physiol. 2002 Jun;129(2):486-99.
5. Substitution rates in alpha-helical transmembrane proteins.
Stevens TJ, Arkin IT.
Protein Sci. 2001 Dec;10(12):2507-17.
4. Turning an opinion inside-out: Rees and Eisenberg's commentary (Proteins 2000;38:121-122) on "Are membrane proteins 'inside-out' proteins?" (Proteins 1999;36:135-143).
Stevens TJ, Arkin IT.
Proteins. 2000 Aug 15;40(3):463-4.
3. Do more complex organisms have a greater proportion of membrane proteins in their genomes?
Stevens TJ, Arkin IT.
Proteins. 2000 Jun 1;39(4):417-20.
2. The effect of nucleotide bias upon the composition and prediction of transmembrane helices.
Stevens TJ, Arkin IT.
Protein Sci. 2000 Mar;9(3):505-11.
1. Are membrane proteins "inside-out" proteins?
Stevens TJ, Arkin IT.
Proteins. 1999 Jul 1;36(1):135-43.
Chignola F, Mari S, Stevens TJ, Fogh RH, Mannella V, Boucher W, Musco G.
Bioinformatics. 2011 Jan 6.
21. A structural dissection of amino acid substitutions in helical transmembrane proteins.
Mokrab Y, Stevens TJ, Mizuguchi K.
Proteins. 2010 Nov 1;78(14):2895-907.
20. Straightforward and complete deposition of NMR data to the PDBe.
Penkett CJ, van Ginkel G, Velankar S, Swaminathan J, Ulrich EL, Mading S, Stevens TJ, Fogh RH, Gutmanas A, Kleywegt GJ, Henrick K, Vranken WF.
J Biomol NMR. 2010 Oct;48(2):85-92.
19. A comprehensive comparison of transmembrane domains reveals organelle-specific properties.
Sharpe HJ, Stevens TJ, Munro S.
Cell. 2010 Jul 9;142(1):158-69.
18. MEMOPS: data modelling and automatic code generation.
Fogh RH, Boucher W, Ionides JM, Vranken WF, Stevens TJ, Laue ED.
J Integr Bioinform. 2010 Mar 25;7(3).
17. DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure.
Cheung MS, Maguire ML, Stevens TJ, Broadhurst RW.
J Magn Reson. 2010 Feb;202(2):223-33.
16. Lipophobicity and the residue environments of the transmembrane alpha-helical bundle.
Mokrab Y, Stevens TJ, Mizuguchi K.
Proteins. 2009 Jan;74(1):32-49
15. RCC1-like repeat proteins: a pangenomic, structurally diverse new superfamily of beta-propeller domains.
Stevens TJ, Paoli M.
Proteins. 2008 Feb 1;70(2):378-87.
14. A nomenclature and data model to describe NMR experiments.
Fogh RH, Vranken WF, Boucher W, Stevens TJ, Laue ED.
J Biomol NMR. 2006 Nov;36(3):147-55.
13. Engineering the structural stability and functional properties of the GI domain into the intrinsically unfolded GII domain of the yeast linker histone Hho1p.
Sanderson A, Stott K, Stevens TJ, Thomas JO.
J Mol Biol. 2005 Jun 10;349(3):608-20.
12. The CCPN data model for NMR spectroscopy: development of a software pipeline.
Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED.
Proteins. 2005 Jun 1;59(4):687-96.
11. A framework for scientific data modeling and automated software development.
Fogh RH, Boucher W, Vranken WF, Pajon A, Stevens TJ, Bhat TN, Westbrook J, Ionides JM, Laue ED.
Bioinformatics. 2005 Apr 15;21(8):1678-84.
10. Distinct protein interfaces in transmembrane domains suggest an in vivo folding model.
Stevens TJ, Mizuguchi K, Arkin IT.
Protein Sci. 2004 Nov;13(11):3028-37.
9. Two homologous domains of similar structure but different stability in the yeast linker histone, Hho1p.
Ali T, Coles P, Stevens TJ, Stott K, Thomas JO.
J Mol Biol. 2004 Apr 16;338(1):139-48.
8. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.
Borner GH, Lilley KS, Stevens TJ, Dupree P.
Plant Physiol. 2003 Jun;132(2):568-77.
7. Membrane proteins: the 'Wild West' of structural biology.
Torres J, Stevens TJ, Samsó M.
Trends Biochem Sci. 2003 Mar;28(3):137-44.
6. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis.
Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P.
Plant Physiol. 2002 Jun;129(2):486-99.
5. Substitution rates in alpha-helical transmembrane proteins.
Stevens TJ, Arkin IT.
Protein Sci. 2001 Dec;10(12):2507-17.
4. Turning an opinion inside-out: Rees and Eisenberg's commentary (Proteins 2000;38:121-122) on "Are membrane proteins 'inside-out' proteins?" (Proteins 1999;36:135-143).
Stevens TJ, Arkin IT.
Proteins. 2000 Aug 15;40(3):463-4.
3. Do more complex organisms have a greater proportion of membrane proteins in their genomes?
Stevens TJ, Arkin IT.
Proteins. 2000 Jun 1;39(4):417-20.
2. The effect of nucleotide bias upon the composition and prediction of transmembrane helices.
Stevens TJ, Arkin IT.
Protein Sci. 2000 Mar;9(3):505-11.
1. Are membrane proteins "inside-out" proteins?
Stevens TJ, Arkin IT.
Proteins. 1999 Jul 1;36(1):135-43.