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Publications

Publications relating to CCPN software development in peer reviewed journals

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Publications from CCPN

A complete list of all published articles relating to CCPN where the developers are in the author list.
  • Wenmr: Structural biology on the grid 
    Wassenaar TA, Van Dijk M, Vranken VF, Vuister GW, Fogh RH, Ionides J, Laue ED, Spronk C, Bonvin AMJJ et al.
    J Grid Computing, 2012 Nov DOI 10.1007/s10723-012-9246-z view the article
  • Structure Simulation with Calculated NMR Parameters — Integrating COSMOS into the CCPN Framework
    I
    Studies in Health Technology and Informatics, 2012 May 175: 162-172. view the article
  • EUROCarbDB: An open-access platform for glycoinformatics.
    von der Lieth C-W, Fogh RF, Ionides J, Lundborg M, Vranken VF, Haslam SM et al.

    Glycobiology, 2011 April. 21(4): 493-502. view the article

  • A software framework for analysing solid-state MAS NMR data.
    Stevens TJ, Fogh RH, Boucher W, Higman VA, Eisenmenger F, Bardiaux B, van Rossum BJ, Oschkinat H, Laue ED. 
    J Biomol NMR
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    2011 Sep 28. 51(4): 437-447. view the article

  • The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR.
    Chignola F, Mari S, Stevens TJ, Fogh RH, Mannella V, Boucher W, Musco G.
    Bioinformatics. 2011 Jan 6; 27(6): 885-886. view the article.
  • Straightforward and complete deposition of NMR data to the PDBe.
    Penkett CJ, van Ginkel G, Velankar S, Swaminathan J, Ulrich EL, Mading S, Stevens TJ, Fogh RH, Gutmanas A, Kleywegt GJ, Henrick K, Vranken WF.
    J Biomol NMR. 2010 Oct;48(2):85-92. view the article
  • MEMOPS: data modelling and automatic code generation.
    Fogh RH, Boucher W, Ionides JM, Vranken WF, Stevens TJ, Laue ED.
    J Integr Bioinform. 2010 Mar 25;7(3). view the article
  • A nomenclature and data model to describe NMR experiments.
    Fogh RH, Vranken WF, Boucher W, Stevens TJ, Laue ED.
    J Biomol NMR. 2006 Nov;36(3):147-55. view the article
  • The CCPN data model for NMR spectroscopy: development of a software pipeline.
    Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED.
    Proteins. 2005 Jun 1;59(4):687-96. view the article
  • A framework for scientific data modeling and automated software development.
    Fogh RH, Boucher W, Vranken WF, Pajon A, Stevens TJ, Bhat TN, Westbrook J, Ionides JM, Laue ED.
    Bioinformatics. 2005 Apr 15;21(8):1678-84 view the article
  • Design of a data model for developing laboratory information management and analysis systems for protein production.
    Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K.
    Proteins
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    2005 Feb 1;58(2):278-84. view the article
  • The CCPN project: an interim report on a data model for the NMR community.
    Fogh R, Ionides J, Ulrich E, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Henrick K, Gilliland G, Berman H, Thornton J, Nilges M, Markley J, Laue E.  
    Nat Struct Biol. 2002 Jun;9(6):416-8. view the article
  • BBSRC Business, July 2001
    Collaboration to make the most of NMR